A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees
| Authors |
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|---|---|
| Publication date | 2013 |
| Journal | IEEE/ACM Transactions on Computational Biology and Bioinformatics |
| Volume | Issue number | 10 | 1 |
| Pages (from-to) | 18-25 |
| Number of pages | 8 |
| Organisations |
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| Abstract |
Here, we present a new fixed parameter tractable algorithm to compute the hybridization number (r) of two rooted, not necessarily binary phylogenetic trees on taxon set (X) in time ((6r r) ยท poly(n)), where (n= |X|). The novelty of this approach is its use of terminals, which are maximal elements of a natural partial order on (X), and several insights from the softwired clusters literature. This yields a surprisingly simple and practical bounded-search algorithm and offers an alternative perspective on the underlying combinatorial structure of the hybridization number problem. |
| Document type | Article |
| Language | English |
| Published at |
https://doi.org/10.1109/TCBB.2012.134
(Final published version)
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