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Results: 297
Number of items: 297
  • Open Access
    van der Ploeg, G. R., White, F. T. G., Jakobsen, R. R., Westerhuis, J. A., Heintz-Buschart, A., & Smilde, A. K. (2026). ACMTF-R: Supervised multi-omics data integration uncovering shared and distinct outcome-associated variation. PLoS ONE, 21(1), Article e0339650. https://doi.org/10.1371/journal.pone.0339650
  • Open Access
    van der Ploeg, G. R. (2026). Microbiome data analysis using multi-way methods. [Thesis, fully internal, Universiteit van Amsterdam].
  • Open Access
    Leygeber, S., Diez-Simon, C., Großmann, J. L., Dubbelman, A. C., Harms, A. C., Westerhuis, J. A., Jacobs, D. M., Lindenburg, P. W., Hendriks, M. M. W. B., Ammerlaan, B. C. H., van den Berg, M. A., van Doorn, R., Mumm, R., Smilde, A. K., Hall, R. D., & Hankemeier, T. (2025). A Data-Driven Approach to Link GC-MS and LC-MS with Sensory Attributes of Chicken Bouillon with Added Yeast-Derived Flavor Products in a Combined Prediction Model. Metabolites, 15(5), Article 317. https://doi.org/10.3390/metabo15050317
  • Open Access
    Li, L., Hoefsloot, H., Bakker, B. M., Horner, D., Rasmussen, M. A., Smilde, A. K., & Acar, E. (2025). Longitudinal Metabolomics Data Analysis Informed by Mechanistic Models. Metabolites, 15(1), Article 2. https://doi.org/10.3390/metabo15010002
  • Open Access
    Abegaz, F., Abedini, D., Dong, L., Westerhuis, J. A., van Eeuwijk, F., Bouwmeester, H., & Smilde, A. K. (2025). Analysis of microbiome high-dimensional experimental design data using generalized linear models and ANOVA simultaneous component analysis. Frontiers in Microbiomes, 4, Article 1584516. https://doi.org/10.3389/frmbi.2025.1584516
  • Open Access
    Li, L., Yan, S., Horner, D., Rasmussen, M. A., Smilde, A. K., & Acar, E. (2024). Revealing static and dynamic biomarkers from postprandial metabolomics data through coupled matrix and tensor factorizations. Metabolomics, 20(4), Article 86. https://doi.org/10.1007/s11306-024-02128-9
  • Open Access
    van der Ploeg, G. R., Brandt, B. W., Keijser, B. J. F., van der Veen, M. H., Volgenant, C. M. C., Zaura, E., Smilde, A. K., Westerhuis, J. A., & Heintz-Buschart, A. (2024). Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis. npj Biofilms and Microbiomes, 10, Article 89. https://doi.org/10.1038/s41522-024-00565-x
  • Open Access
    Abegaz, F., Abedini, D., White, F., Guerrieri, A., Zancarini, A., Dong, L., Westerhuis, J. A., van Eeuwijk, F., Bouwmeester, H., & Smilde, A. K. (2024). A strategy for differential abundance analysis of sparse microbiome data with group-wise structured zeros. Scientific Reports, 14, Article 12433. https://doi.org/10.1038/s41598-024-62437-w
  • Open Access
    Li, L., Yan, S., Bakker, B. M., Hoefsloot, H., Chawes, B., Horner, D., Rasmussen, M. A., Smilde, A. K., & Acar, E. (2024). Analyzing postprandial metabolomics data using multiway models: a simulation study. BMC Bioinformatics, 25, Article 94. https://doi.org/10.1186/s12859-024-05686-w
  • Open Access
    Becker, F., Smilde, A. K., & Acar, E. (2023). Unsupervised EHR-based phenotyping via matrix and tensor decompositions. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 13(4), Article e1494. https://doi.org/10.1002/widm.1494
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