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Results: 81
Number of items: 81
  • Avila-Pérez, M., Vreede, J., Tang, Y., Bende, O., Losi, A., Gärtner, W., & Hellingwerf, K. (2009). In vivo mutational analysis of YtvA from Bacillus subtilis: Mechanism of light activation of the general stress response. The Journal of Biological Chemistry, 284(37), 24958-24964. https://doi.org/10.1074/jbc.M109.033316
  • Vreede, J., Wolf, M. G., de Leeuw, S. W., & Bolhuis, P. G. (2009). Reordering hydrogen bonds using Hamiltonian replica exchange enhances sampling of conformational changes in biomolecular systems. The journal of Physical Chemistry. B, 113(18), 6484-6494. https://doi.org/10.1021/jp809641j
  • Bussink, A. P., Verhoek, M., Vreede, J., Ghauharali-van der Vlugt, K., Donker-Koopman, W. E., Sprenger, R. R., Hollak, C. E., Aerts, J. F. M. G., & Boot, R. G. (2009). Common G102S polymorphism in chitotriosidase differentially affects activity towards 4-methylumbelliferyl substrates. The FEBS Journal, 276(19), 5678-5688. https://doi.org/10.1111/j.1742-4658.2009.07259.x
  • Vreede, J., Hellingwerf, K. J., & Bolhuis, P. G. (2008). Helix formation is a dynamical bottleneck in the recovery reaction of Photoactive Yellow Protein. Proteins, 72(1), 136-149. https://doi.org/10.1002/prot.21902
  • Vreede, J., Hellingwerf, K. J., & Crielaard, W. (2008). TraR auto-inducer enhances protein backbone fluctuations in DNA binding domain. FEBS Letters, 582(5), 805-809. https://doi.org/10.1016/j.febslet.2008.01.062
  • Leenders, E. J. M., Guidoni, L., Roethlisberger, U., Vreede, J., Bolhuis, P. G., & Meijer, E. J. (2007). Protonation of the Chromophore in the Photoactive Yellow Protein. The journal of Physical Chemistry. B, 111(14), 3765-3773. https://doi.org/10.1021/jp067158b
  • Open Access
    Vreede, J. (2007). Structural basis and dynamics of signal transduction in the PAS protein family. [Thesis, fully internal, Universiteit van Amsterdam].
  • Open Access
    Vreede, J., Crielaard, W., Hellingwerf, K. J., & Bolhuis, P. G. (2005). Predicting the signaling state of photoactive yellow protein. Biophysical Journal, 88, 3525-3535. https://doi.org/10.1529/biophysj.104.055103
  • Vreede, J., van der Horst, M. A., Kort, R., Crielaard, W., & Hellingwerf, K. J. (2004). Measuring and modelling dynamical changes in the structure of photoactive yellow protein. Phase Transitions, 77, 3-20. https://doi.org/10.1080/01411590310001621384
  • Open Access
    Rekvig, L., Kranenburg, M., Vreede, J., Hafskjold, B., & Smit, B. (2003). Investigation of Surfactant Efficiency Using Dissipative Particle Dynamics. Langmuir, 20, 8195-8205.
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