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Results: 81
Number of items: 81
  • Open Access
    Zhu, L. (2014). Communicating helices: molecular simulation of allosteric receptor proteins. [Thesis, fully internal, Universiteit van Amsterdam].
  • Open Access
    Zhu, L., Bolhuis, P. G., & Vreede, J. (2013). The HAMP Signal Relay Domain Adopts Multiple Conformational States through Collective Piston and Tilt Motions. PLoS Computational Biology, 9(2), Article e1002913. https://doi.org/10.1371/journal.pcbi.1002913
  • Open Access
    Joyeux, M., & Vreede, J. (2013). A Model of H-NS Mediated Compaction of Bacterial DNA. Biophysical Journal, 104(7), 1615-1622. https://doi.org/10.1016/j.bpj.2013.02.043
  • Open Access
    Singhal, K., Vreede, J., Mashaghi, A., Tans, S. J., & Bolhuis, P. G. (2013). Hydrophobic Collapse of Trigger Factor Monomer in Solution. PLoS ONE, 8(4), e59683. https://doi.org/10.1371/journal.pone.0059683
  • Juraszek, J., Vreede, J., & Bolhuis, P. G. (2012). Transition path sampling of protein conformational changes. Chemical Physics, 396, 30-44. https://doi.org/10.1016/j.chemphys.2011.04.032
  • Open Access
    Vreede, J., & Dame, R. T. (2012). Predicting the effect of ions on the conformation of the H-NS dimerization domain. Biophysical Journal, 103(1), 89-98. https://doi.org/10.1016/j.bpj.2012.05.040
  • Open Access
    Schor, M., Vreede, J., & Bolhuis, P. G. (2012). Elucidating the locking mechanism of peptides onto growing amyloid fibrils through transition path sampling. Biophysical Journal, 103(6), 1296-1304. https://doi.org/10.1016/j.bpj.2012.07.056
  • Kwakman, P. H. S., Krijgsveld, J., de Boer, L., Nguyen, L. T., Boszhard, L., Vreede, J., Dekker, H. L., Speijer, D., Drijfhout, J. W., te Velde, A. A., Crielaard, W., Vogel, H. J., Vandenbroucke-Grauls, C. M. J. E., & Zaat, S. A. J. (2011). Native thrombocidin-1 and unfolded thrombocidin-1 exert antimicrobial activity via distinct structural elements. The Journal of Biological Chemistry, 286(50), 43506-43514. https://doi.org/10.1074/jbc.M111.248641
  • Rupenyan, A. B., Vreede, J., van Stokkum, I. H. M., Hospes, M., Kennis, J. T. M., Hellingwerf, K. J., & Groot, M. L. (2011). Proline 68 enhances photoisomerization yield in photoactive yellow protein. The journal of Physical Chemistry. B, 115(20), 6668-6677. https://doi.org/10.1021/jp112113s
  • Vreede, J., Juraszek, J., & Bolhuis, P. G. (2010). Predicting the reaction coordinates of millisecond light-induced conformational changes in photoactive yellow protein. Proceedings of the National Academy of Sciences of the United States of America, 107(6), 2397-2402. https://doi.org/10.1073/pnas.0908754107
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