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Results: 81
Number of items: 81
  • Open Access
    van der Valk, R. A., Vreede, J., Qin, L., Moolenaar, G. F., Hofmann, A., Goosen, N., & Dame, R. T. (2017). Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity. eLife, 6, Article e27369. https://doi.org/10.7554/eLife.27369
  • Meuzelaar, H., Vreede, J., & Woutersen, S. (2016). Influence of Glu/Arg, Asp/Arg, and Glu/Lys Salt Bridges on a-Helical Stability and Folding Kinetics. Biophysical Journal, 110(11), 2328-2341. https://doi.org/10.1016/j.bpj.2016.04.015
  • Open Access
    Vreede, J., Bolhuis, P. G., & Swenson, D. W. H. (2016). Predicting the Mechanism and Kinetics of the Watson-Crick to Hoogsteen Base Pairing Transition. Biophysical Journal, 110(3, suppl. 1), 563A-564A. https://doi.org/10.1016/j.bpj.2015.11.3014
  • Open Access
    Singhal, K. (2016). From flexibility to function: Molecular dynamics simulations of conformational changes in chaperones and photoreceptors. [Thesis, fully internal, Universiteit van Amsterdam].
  • Open Access
    Zhu, J., Vreede, J., Hospes, M., Arents, J., Kennis, J. T. M., van Stokkum, I. H. M., Hellingwerf, K. J., & Groot, M. L. (2015). Short Hydrogen Bonds and Negative Charge in Photoactive Yellow Protein Promote Fast Isomerization but not High Quantum Yield. The journal of Physical Chemistry. B, 119(6), 2372-2383. https://doi.org/10.1021/jp506785q
  • Open Access
    Singhal, K., Vreede, J., Mashaghi, A., Tans, S. J., & Bolhuis, P. (2015). The Trigger Factor chaperone encapsulates and stabilizes partial folds of substrate proteins. PLoS Computational Biology, 11(10), Article e1004444. https://doi.org/10.1371/journal.pcbi.1004444
  • Open Access
    van Mastbergen, E. C., & Vreede, J. (2015). Modeling the binding of H-NS to DNA. Biophysical Journal, 108(2, suppl. 1), 537A-538A. https://doi.org/10.1016/j.bpj.2014.11.2948
  • Open Access
    Meuzelaar, H. (2015). New light on protein folding: Unraveling folding and unfolding mechanisms using time-resolved and two-dimensional vibrational spectroscopy. [Thesis, fully internal, Universiteit van Amsterdam].
  • Meuzelaar, H., Tros, M., Huerta-Viga, A., van Dijk, C. N., Vreede, J., & Woutersen, S. (2014). Solvent-Exposed Salt Bridges Influence the Kinetics of α-Helix Folding and Unfolding. The Journal of Physical Chemistry Letters, 5(5), 900-904. https://doi.org/10.1021/jz500029a
  • Open Access
    Zhu, L. (2014). Communicating helices: molecular simulation of allosteric receptor proteins. [Thesis, fully internal, Universiteit van Amsterdam].
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