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Results: 46
Number of items: 46
  • Open Access
    Bruning, O., Rauwerda, H., Dekker, R. J., de Leeuw, W. C., Wackers, P. F. K., Ensink, W. A., Jonker, M. J., & Breit, T. M. (2015). Valuable lessons-learned in transcriptomics experimentation. Transcription, 6(3), 51-55. https://doi.org/10.1080/21541264.2015.1064195
  • Open Access
    Locati, M. D., Terpstra, I., de Leeuw, W. C., Kuzak, M., Rauwerda, H., Ensink, W. A., van Leeuwen, S., Nehrdich, U., Spaink, H. P., Jonker, M. J., Breit, T. M., & Dekker, R. J. (2015). Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. Nucleic Acids Research, 43(14), Article e89. https://doi.org/10.1093/nar/gkv303
  • The 100 Tomato Genome Sequencing Consortium, Aflitos, S., de Jong, H., Smit, S., Breit, T., Gravendeel, B., Schranz, E., Vos, R., & Rauwerda, J. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant Journal, 80(1), 136-148. https://doi.org/10.1111/tpj.12616
  • Open Access
    Jonker, M. J., de Leeuw, W. C., Marinković, M., Wittink, F. R. A., Rauwerda, H., Bruning, O., Ensink, W. A., Fluit, A. C., Boel, C. H., de Jong, M., & Breit, T. M. (2014). Absence/presence calling in microarray-based CGH experiments with non-model organisms. Nucleic Acids Research, 42(11), e94. https://doi.org/10.1093/nar/gku343
  • Open Access
    Bruning, O., Rodenburg, W., van Oostrom, C. T., Jonker, M. J., de Jong, M., Dekker, R. J., Rauwerda, H., Ensink, W. A., de Vries, A., & Breit, T. M. (2014). A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure. PLoS ONE, 9(5), e97089. https://doi.org/10.1371/journal.pone.0097089
  • Belloum, A., Inda, M. A., Vasunin, D., Korkhov, V., Zhao, Z., Rauwerda, H., Breit, T. M., Bubak, M., & Hertzberger, L. O. (2011). Collaborative e-Science Experiments and Scientific Workflows. IEEE Internet Computing, 15(4), 39-47. https://doi.org/10.1109/MIC.2011.87
  • Wassink, I., Ooms, M., Neerincx, P., van der Veer, G., Rauwerda, H., Leunissen, J. A. M., Breit, T. M., Nijholt, A., & van der Vet, P. (2010). e-BioFlow: improving practical use of workflow systems in bioinformatics. In S. Khuri, L. Lhotská, & N. Pisanti (Eds.), Information Technology in Bio- and Medical Informatics, ITBAM 2010: first international conference, Bilbao, Spain, September 1-2, 2010 : proceedings (pp. 1-15). (Lecture Notes in Computer Science; Vol. 6266). Springer. https://doi.org/10.1007/978-3-642-15020-3_1
  • Stockhammer, O. W., Rauwerda, H., Wittink, F. R., Breit, T. M., Meijer, A. H., & Spaink, H. P. (2010). Transcriptome analysis of Traf6 function in the innate immune response of zebrafish embryos. Molecular Immunology, 48(1-3), 179-190. https://doi.org/10.1016/j.molimm.2010.08.011
  • Bruning, O., Yuan, X., Rodenburg, W., Bruins, W., van Oostrom, C. T., Rauwerda, H., Wittink, F. R. A., Jonker, M. J., de Vries, A., & Breit, T. M. (2010). Serious complications in gene-expression studies with stress perturbation: An example of UV-exposed p53-mutant mouse embryonic fibroblasts. Transcription, 1(3), 159-164. https://doi.org/10.4161/trns.1.3.13487
  • Open Access
    Rauwerda, H., de Jong, M., de Leeuw, W. C., Spaink, H. P., & Breit, T. M. (2010). Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example. BMC Research Notes, 3, 192. https://doi.org/10.1186/1756-0500-3-192
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