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Results: 210
Number of items: 210
  • Open Access
    Bruggeman, F. J., Remeijer, M., Droste, M., Salinas, L., Wortel, M., Planqué, R., Sauro, H. M., Teusink, B., & Westerhoff, H. V. (2023). Whole-cell metabolic control analysis. Biosystems, 234, Article 105067. https://doi.org/10.1016/j.biosystems.2023.105067
  • Open Access
    Mondeel, T. D. G. A. (2022). Waves, ChIPs, GEMMs, gears, markers and maps: Computational systems biology from cell cycle oscillations to metabolic fluxes. [Thesis, fully internal, Universiteit van Amsterdam].
  • Open Access
    Weglarz-Tomczak, E., Mondeel, T. D. G. A., Piebes, D. G. E., & Westerhoff, H. V. (2021). Simultaneous integration of gene expression and nutrient availability for studying the metabolism of hepatocellular carcinoma cell lines. BIOMOLECULES, 11(4), Article 490. https://doi.org/10.3390/biom11040490
  • Open Access
    Verstegen, N. J. M., Ubels, V., Westerhoff, H. V., van Ham, S. M., & Barberis, M. (2021). System-Level Scenarios for the Elucidation of T Cell-Mediated Germinal Center B Cell Differentiation. Frontiers in Immunology, 12, Article 734282. https://doi.org/10.3389/fimmu.2021.734282
  • Sharma, R. P., Kumar, V., Schuhmacher, M., Kolodkin, A., & Westerhoff, H. V. (2020). Development and evaluation of a harmonized whole body physiologically based pharmacokinetic (PBPK) model for flutamide in rats and its extrapolation to humans. Environmental Research, 182, Article 108948. https://doi.org/10.1016/j.envres.2019.108948
  • Open Access
    Mondeel, T. D. G. A., Ivanov, O., Westerhoff, H. V., Liebermeister, W., & Barberis, M. (2020). Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs. Npj Systems Biology and Applications, 6, Article 8. https://doi.org/10.1038/s41540-020-0125-0
  • Open Access
    Kolodkin, A. N., Sharma, R. P., Colangelo, A. M., Ignatenko, A., Martorana, F., Jennen, D., Briedé, J. J., Brady, N., Barberis, M., Mondeel, T. D. G. A., Papa, M., Kumar, V., Peters, B., Skupin, A., Alberghina, L., Balling, R., & Westerhoff, H. V. (2020). ROS networks: Designs, aging, Parkinson's disease and precision therapies. Npj Systems Biology and Applications, 6, Article 34. https://doi.org/10.1038/s41540-020-00150-w
  • Open Access
    Abudukelimu, A., Barberis, M., Redegeld, F., Sahin, N., Sharma, R. P., & Westerhoff, H. V. (2020). Complex Stability and an Irrevertible Transition Reverted by Peptide and Fibroblasts in a Dynamic Model of Innate Immunity. Frontiers in Immunology, 10, Article 3091. https://doi.org/10.3389/fimmu.2019.03091
  • Open Access
    Westerhoff, H. V., & Kolodkin, A. N. (2020). Advice from a systems-biology model of the corona epidemics. Npj Systems Biology and Applications, 6, Article 18. https://doi.org/10.1038/s41540-020-0138-8
  • Open Access
    Damiani, C., Maspero, D., Di Filippo, M., Colombo, R., Pescini, D., Graudenzi, A., Westerhoff, H. V., Alberghina, L., Vanoni, M., & Mauri, G. (2019). Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. PLoS Computational Biology, 15(2), Article e1006733. https://doi.org/10.1371/journal.pcbi.1006733
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