van Passel, M. W. J. (2006). Anomalous DNA in prokaryotic genomes. [Thesis, fully internal, Universiteit van Amsterdam].
Kok, J. R. (2006). Cooperation and learning in cooperative multiagent systems. [Thesis, fully internal, Universiteit van Amsterdam].
Tames, I. M. (2006). Oorlog voor onze gedachten : oorlog, neutraliteit en identiteit in het Nederlandse publieke debat, 1914-1918. [Thesis, fully internal, Universiteit van Amsterdam]. Verloren.
van Velthoven, M. E. J. (2006). Combined en-face optical coherence tomography and confocal ophthalmoscopy for retinal imaging. [Thesis, fully internal, Universiteit van Amsterdam].
Spalek, R. (2006). Quantum Algorithms, Lower Bounds, and Time-Space Tradeoffs. [Thesis, fully internal, Universiteit van Amsterdam]. ILLC.
Bwire, R. (2006). Interactions of HIV with leprosy and tuberculosis. [Thesis, externally prepared, Universiteit van Amsterdam].
Erbas, C. (2006). System-level modelling and design space exploration for multiprocessor embedded system-on-chip architectures. [Thesis, fully internal, Universiteit van Amsterdam]. Amsterdam University Press.
Boon, E. M. J. (2006). The HGF/MET pathway in colorectal cancer. [Thesis, fully internal, Universiteit van Amsterdam].
van Holten, J. (2006). Interferon beta for the treatment of rheumatoid arthritis? [Thesis, fully internal, Universiteit van Amsterdam].
Keller, T. T. (2006). Acute respiratory tract infections and (athero)thrombotic disease. [Thesis, fully internal, Universiteit van Amsterdam].