Totally asymmetric simple exclusion process simulations of molecular motor transport on random networks with asymmetric exit rates

Open Access
Authors
Publication date 2015
Journal Physical Review E
Article number 052714
Volume | Issue number 92 | 5
Number of pages 9
Organisations
  • Faculty of Science (FNWI) - Institute of Physics (IoP) - Van der Waals-Zeeman Institute (WZI)
Abstract
Using the totally asymmetric simple-exclusion-process and mean-field transport theory, we investigate the transport in closed random networks with simple crossing topology—two incoming, two outgoing segments, as a model for molecular motor motion along biopolymer networks. Inspired by in vitro observation of molecular motor motion, we model the motor behavior at the intersections by introducing different exit rates for the two outgoing segments. Our simulations of this simple network reveal surprisingly rich behavior of the transport current with respect to the global density and exit rate ratio. For asymmetric exit rates, we find a broad current plateau at intermediate motor densities resulting from the competition of two subnetwork populations. This current plateau leads to stabilization of transport properties within such networks.
Document type Article
Language English
Published at https://doi.org/10.1103/PhysRevE.92.052714
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