7T functional MRI finds no evidence for distinct functional subregions in the subthalamic nucleus during a speeded decision-making task

Contributors
Publication date 28-06-2022
Description
These are the data of ds-02 of the following paper: Miletić, S., Keuken, M. C., Mulder, M. J., Trampel, R., De Hollander, G., & Forstmann, B. U. (2022). 7T functional MRI finds no evidence for distinct functional subregions in the subthalamic nucleus during a speeded decision-making task. Cortex. The directory tree is as follows: . ├── both                                    <---- 3rd-level whole-brain GLM which combines both datasets; FEAT output files and design matrices │   └── glm_level3 │       ├── cope10.gfeat │       ├── cope11.gfeat │       ├── cope12.gfeat │       ├── cope13.gfeat │       ├── cope14.gfeat │       ├── cope15.gfeat │       ├── cope1.gfeat │       ├── cope2.gfeat │       ├── cope3.gfeat │       ├── cope4.gfeat │       ├── cope5.gfeat │       ├── cope6.gfeat │       ├── cope7.gfeat │       ├── cope8.gfeat │       ├── cope9.gfeat │       ├── fsfs │       ├── third_level_design_dmc.con │       ├── third_level_design_dmc_cov.png │       ├── third_level_design_dmc_cov.ppm │       ├── third_level_design_dmc.fsf │       ├── third_level_design_dmc.grp │       ├── third_level_design_dmc.mat │       ├── third_level_design_dmc.png │       └── third_level_design_dmc.ppm └── ds-02     ├── conjunct_masks                      <---- Conjunction of manually delineated STN masks per subject in MP2RAGEME space     │   ├── sub-01     │   ├── sub-02     │   ├── sub-03     │   ├── sub-05     │   ├── sub-...     │   └── sub-15     ├── extracted_signal    <---- fMRI timeseries extracted from individual STN subregions     │   ├── sub-01     │   ├── sub-02     │   ├── sub-03     │   ├── sub-05     │   ├── sub-...     │   └── sub-15     ├── feat_files             <---- First (run) & second (subject) level FSL FEAT files     │   ├── sub-01     │   ├── sub-02     │   ├── sub-03     │   ├── sub-05     │   ├── sub-...     │   └── sub-15     ├── fmriprep             <---- Output from fmriprep     │   ├── dataset_description.json     │   ├── desc-aparcaseg_dseg.tsv     │   ├── desc-aseg_dseg.tsv     │   ├── freesurfer     │   ├── logs     │   ├── sub-01     │   ├── sub-01.html     │   ├── sub-02     │   ├── sub-02.html     │   ├── sub-03     │   ├── sub-03.html     │   ├── sub-05     │   ├── sub-05.html     │   ├── sub-06     │   ├── sub-06.html     │   ├── sub-...     │   ├── sub-15     │   └── sub-15.html     ├── fmriprep_data        <---- Input for fmriprep (bidsified "raw" data; "T1w" is masked so background noise doesnt mess up fmriprep, but otherwise unprocessed)     │   ├── dataset_description.json     │   ├── sub-01     │   ├── sub-02     │   ├── sub-03     │   ├── sub-05     │   ├── sub...     │   ├── sub-15     │   └── task-randomdotmotion_bold.json     ├── masks_warped                       <---- stn (subregions) masks warped to relevant spaces     │   ├── sub-01     │   ├── sub-02     │   ├── sub-03     │   ├── sub-05     │   ├── sub-...     │   └── sub-15     ├── masks_warped_accolla             <---- stn (subregions) masks from Accolla et al (2014) warped to relevant spaces     │   ├── sub-01     │   ├── sub-02     │   ├── sub-03     │   ├── sub-05     │   ├── sub-...     │   └── sub-15     ├── MNI_group_space             <---- STN mask in group (MNI) space, and the PCA on these masks     │   ├── group_stn_l.nii.gz     │   ├── group_stn_r.nii.gz     │   ├── mean_stnl.nii.gz     │   ├── mean_stnr.nii.gz     │   ├── stn_l_pca.nii.gz     │   └── stn_r_pca.nii.gz     └── PCA_segments                <---- subject-wise PCA-based STN segments         ├── sub-01         ├── sub-02         ├── sub-03         ├── sub-05         ├── sub-...         └── sub-15
Publisher Universiteit van Amsterdam
Organisations
  • Faculty of Social and Behavioural Sciences (FMG) - Psychology Research Institute (PsyRes)
Document type Dataset
Related publication 7T functional MRI finds no evidence for distinct functional subregions in the subthalamic nucleus during a speeded decision-making task
DOI https://doi.org/10.21942/uva.20160598.v1
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