7T functional MRI finds no evidence for distinct functional subregions in the subthalamic nucleus during a speeded decision-making task
| Contributors |
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| Publication date | 28-06-2022 |
| Description |
These are the data of ds-02 of the following paper:
Miletić, S., Keuken, M. C., Mulder, M. J., Trampel, R., De Hollander, G., & Forstmann, B. U. (2022). 7T functional MRI finds no evidence for distinct functional subregions in the subthalamic nucleus during a speeded decision-making task. Cortex.
The directory tree is as follows:
.
├── both <---- 3rd-level whole-brain GLM which combines both datasets; FEAT output files and design matrices
│ └── glm_level3
│ ├── cope10.gfeat
│ ├── cope11.gfeat
│ ├── cope12.gfeat
│ ├── cope13.gfeat
│ ├── cope14.gfeat
│ ├── cope15.gfeat
│ ├── cope1.gfeat
│ ├── cope2.gfeat
│ ├── cope3.gfeat
│ ├── cope4.gfeat
│ ├── cope5.gfeat
│ ├── cope6.gfeat
│ ├── cope7.gfeat
│ ├── cope8.gfeat
│ ├── cope9.gfeat
│ ├── fsfs
│ ├── third_level_design_dmc.con
│ ├── third_level_design_dmc_cov.png
│ ├── third_level_design_dmc_cov.ppm
│ ├── third_level_design_dmc.fsf
│ ├── third_level_design_dmc.grp
│ ├── third_level_design_dmc.mat
│ ├── third_level_design_dmc.png
│ └── third_level_design_dmc.ppm
└── ds-02
├── conjunct_masks <---- Conjunction of manually delineated STN masks per subject in MP2RAGEME space
│ ├── sub-01
│ ├── sub-02
│ ├── sub-03
│ ├── sub-05
│ ├── sub-...
│ └── sub-15
├── extracted_signal <---- fMRI timeseries extracted from individual STN subregions
│ ├── sub-01
│ ├── sub-02
│ ├── sub-03
│ ├── sub-05
│ ├── sub-...
│ └── sub-15
├── feat_files <---- First (run) & second (subject) level FSL FEAT files
│ ├── sub-01
│ ├── sub-02
│ ├── sub-03
│ ├── sub-05
│ ├── sub-...
│ └── sub-15
├── fmriprep <---- Output from fmriprep
│ ├── dataset_description.json
│ ├── desc-aparcaseg_dseg.tsv
│ ├── desc-aseg_dseg.tsv
│ ├── freesurfer
│ ├── logs
│ ├── sub-01
│ ├── sub-01.html
│ ├── sub-02
│ ├── sub-02.html
│ ├── sub-03
│ ├── sub-03.html
│ ├── sub-05
│ ├── sub-05.html
│ ├── sub-06
│ ├── sub-06.html
│ ├── sub-...
│ ├── sub-15
│ └── sub-15.html
├── fmriprep_data <---- Input for fmriprep (bidsified "raw" data; "T1w" is masked so background noise doesnt mess up fmriprep, but otherwise unprocessed)
│ ├── dataset_description.json
│ ├── sub-01
│ ├── sub-02
│ ├── sub-03
│ ├── sub-05
│ ├── sub...
│ ├── sub-15
│ └── task-randomdotmotion_bold.json
├── masks_warped <---- stn (subregions) masks warped to relevant spaces
│ ├── sub-01
│ ├── sub-02
│ ├── sub-03
│ ├── sub-05
│ ├── sub-...
│ └── sub-15
├── masks_warped_accolla <---- stn (subregions) masks from Accolla et al (2014) warped to relevant spaces
│ ├── sub-01
│ ├── sub-02
│ ├── sub-03
│ ├── sub-05
│ ├── sub-...
│ └── sub-15
├── MNI_group_space <---- STN mask in group (MNI) space, and the PCA on these masks
│ ├── group_stn_l.nii.gz
│ ├── group_stn_r.nii.gz
│ ├── mean_stnl.nii.gz
│ ├── mean_stnr.nii.gz
│ ├── stn_l_pca.nii.gz
│ └── stn_r_pca.nii.gz
└── PCA_segments <---- subject-wise PCA-based STN segments
├── sub-01
├── sub-02
├── sub-03
├── sub-05
├── sub-...
└── sub-15
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| Publisher | Universiteit van Amsterdam |
| Organisations |
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| Document type | Dataset |
| Related publication | 7T functional MRI finds no evidence for distinct functional subregions in the subthalamic nucleus during a speeded decision-making task |
| DOI | https://doi.org/10.21942/uva.20160598.v1 |
| Permalink to this page | |
