Supplementary Electronic File Online S6.1
| Contributors |
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| Publication date | 09-08-2019 |
| Description |
Supplementary
Dataset 1: Metrics
and Genbank accession numbers on the obtained metagenome-assembled
genomes (MAGs). The total size of the MAG (Mb), the number of
contains (# Contigs), the contig N50 (kb), maximum contig length
(kb), estimated mean coverage, average G+C mol%, total number of 5S,
16S and 23S rRNAs, total number of tRNAs and estimated percentages of
CheckM completeness (Compl), contamination (Cont) and strain
heterogeneity (Str het) are given. The final given name used for the
Genbank submission (NCBI organism name) was derived from the Genome
Taxonomy Database (GTDP) classification according to (Parks
et al. 2018)
and where possible verified with the 16S rRNA gene classification
according to the SILVA database (see column “Proposed name
(GTDB)”). For the latter, BLAST results are reported: taxonomy of
the best hit, identity with this best hit (%), e-value of the match,
the length of the query (number of nucleotides) and the coverage with
the hit (%).
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| Publisher | Universiteit van Amsterdam |
| Organisations |
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| Document type | Dataset |
| Related publication | Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake |
| DOI | https://doi.org/10.21942/uva.9168296.v1 |
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