Ten Simple Rules for making a software tool workflow-ready

Open Access
Authors
  • D. Lowe
  • A.R. Williams
  • Q. Groom
  • M. Dillen
  • F. Coppens
  • B. Grüning
  • I. Eguinoa
  • P. Ewels
  • C. Goble
Publication date 24-03-2022
Journal PLoS Computational Biology
Article number e1009823
Volume | Issue number 18 | 3
Number of pages 11
Organisations
  • Faculty of Science (FNWI) - Informatics Institute (IVI)
Abstract
Workflows have become a core part of computational scientific analysis in recent years. Automated computational workflows multiply the power of researchers, potentially turning “hand-cranked” data processing by informaticians into robust factories for complex research output.

However, in order for a piece of software to be usable as a workflow-ready tool, it may require alteration from its likely origin as a standalone tool. Research software is often created in response to the need to answer a research question with the minimum expenditure of time and money in resource-constrained projects. The level of quality might range from “it works on my computer” to mature and robust projects with support across multiple operating systems.

Despite significant increase in uptake of workflow tools, there is little specific guidance for writing software intended to slot in as a tool within a workflow; or on converting an existing standalone research-quality software tool into a reusable, composable, well-behaved citizen within a larger workflow.

In this paper we present 10 simple rules for how a software tool can be prepared for workflow use.
Document type Editorial
Language English
Published at https://doi.org/10.5281/zenodo.5636487 https://doi.org/10.1371/journal.pcbi.1009823
Downloads
journal.pcbi.1009823 (Final published version)
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