Data for: The biogeographic and evolutionary processes shaping population divergence in Laupala

These are the data and scripts corresponding to "The biogeographic and evolutionary processes shaping population divergence in Laupala", by Thomas Blankers and Kerry L. Shaw.The data include the main VCF files used in the analyses: VCF.recode.vcf is the VCF file with all SNPs.VCF_anchored.vcf is the VCF file with SNPS in the pseudo-molecule assemblyVCF_GQselectedIndividualsforSNAPP_polymorphic.recode.vcf is included in the SNAPP subfolder and is the VCF file for the individuals selected for the divergence time estimation.Additional data files include .nex files used in the SVDquartets analysis and several files that are loaded in the scripts.