Additional file 3 of Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens

Additional file 3. Summary of the variant calling and LOH blocks analyses for C. metapsilosis strains after read mapping on the reference genome. The different columns indicate various measured variables in this order, Strain: strain name or code; Other name: alternative strain names or codes; MAT: mating type; Type: hybrid or parental nature of the strain; Coverage: sequencing coverage; %reads mapped: percentage of sequencing reads mapped to the reference; Genome > 30 reads: number of positions in the reference genome mapped by more than 30 reads; Variants: number of called variants; PASS Variants: variants that pass the quality filters; PASS SNPs: variants that are single nucleotide polymorphisms; Heteroz Variant PASS: heterozygous variants; Homoz Variant PASS: homozygous variants; PASS Variants/kb; variant density; PASS SNPSs/kb: SNP density; Heteroz Variants/kb: heterozygous variant density; Homoz Variants/kb: homozygous variant density; LOH Blocks > 100bp: number of blocks larger than 100bp; LOH nucl >100bp: number of sites within blocks larger than 100bp; LOH genome >100bp: percentage of the genome sequence within LOH blocks larger than 100bp; Variants in Heter blocks: number of variants within heterozygous blocks; Heter nucl > 100bp: number of sites within heterozygous blocks larger than 100bp; Parental divergence: average nucleotide divergence between the two haplotypes in heterozygous blocks.