Additional file 4: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

Creators
Contributors
  • Adrian-Stefan Andrei
  • Maliheh Mehrshad
  • Rohit Ghai
  • Dimitry Y. Sorokin
Publication date 2018
Description
Dataset S2. Organism names, statistics and general description incl. Completeness and contamination estimates, phylogeny and DDBJ/EMBL/Genbank accession numbers of the metagenome assembled genomes (MAGs) described in this paper. All submitted versions described in this paper are version XXXX01000000. Sizeâ =â recovered genome size, Completeness (Compl1), contamination (Cont), strain heterogenity (Str het) and Taxon CheckM were inferred from lineage-specific marker sets and a reference tree build with CheckM [74]. Additional completeness (compl2) and redundancy (red) estimates were inferred based on the presence of universal single copy genes for Bacteria and Archaea [75]. Decision and confidence intervals from the Candidate Phyla Radiation (CPR) scan [75] are given, as well as the taxonomy of the besthit in SILVA when 16S rRNA genes were present. Phylum/class 16 ribosomal proteins is the taxonomy derived from our ribosomal protein trees (see main text: Figs. 2 and 3). OTU gives the inferred link of a population genome with our 16S rRNA gene amplicon dataset (Additional file 3). (XLSX 253 kb)
Publisher Figshare
Organisations
  • Faculty of Science (FNWI) - Institute for Biodiversity and Ecosystem Dynamics (IBED)
Document type Dataset
Related publication A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
DOI https://doi.org/10.6084/m9.figshare.7109276.v1
Other links https://springernature.figshare.com/articles/Additional_file_4_of_A_metagenomics_roadmap_to_the_uncultured_genome_diversity_in_hypersaline_soda_lake_sediments/7109276/1
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