Structure of the [M + H - H2O]+ ion from tetraglycine: a revisit by means of density functional theory and isotope labeling

Authors
  • U.H. Verkerk
  • J. Zhao
  • M.J. van Stipdonk
  • B.J. Bythell
  • J. Oomens
  • A.C. Hopkinson
  • K.W.M. Siu
Publication date 2011
Journal The Journal of Physical Chemistry. A
Volume | Issue number 115 | 24
Pages (from-to) 6683-6687
Organisations
  • Faculty of Science (FNWI) - Van 't Hoff Institute for Molecular Sciences (HIMS)
Abstract
Collision-induced dissociations of protonated 18O-labeled tetraglycines labeled separately at either the first or the second amide bond established that water loss from the backbone occurs from the N-terminal residue. Density functional theory at B3LYP/6-311++G(d,p) predicted that the low-energy [G4 + H - H2O]+ product ion is an N1-protonated 3,5-dihydro-4H-imidazol-4-one. The ion at the lowest energy, III, is 24.8 kcal mol-1 lower than the protonated oxazole structure, II, proposed by Bythell et al.( J. Phys. Chem A2010, 114, 5076-5082). In addition, structure III has a predicted IR spectrum that provides a better match with the published experimental IRMPD spectrum than that of structure II.
Document type Article
Language English
Published at https://doi.org/10.1021/jp202820h
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