Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations

Open Access
Authors
Publication date 04-2013
Journal Interface Focus
Article number 20120087
Volume | Issue number 3 | 2
Number of pages 8
Organisations
  • Faculty of Science (FNWI) - Informatics Institute (IVI)
Abstract
Multiscale simulations are essential in the biomedical domain to accurately model human physiology. We present a modular approach for designing, constructing and executing multiscale simulations on a wide range of resources, from laptops to petascale supercomputers, including combinations of these. Our work features two multiscale applications, in-stent restenosis and cerebrovascular bloodflow, which combine multiple existing single-scale applications to create a multiscale simulation. These applications can be efficiently coupled, deployed and executed on computers up to the largest (peta) scale, incurring a coupling overhead of 1-10% of the total execution time.
Document type Article
Note In theme issue 'The virtual physiological human: integrative approaches to computational biomedicine'
Language English
Published at https://doi.org/10.1098/rsfs.2012.0087
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20120087.full (Final published version)
Supplementary materials
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