Additional file 9: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

Creators
Contributors
  • Adrian-Stefan Andrei
  • Maliheh Mehrshad
  • Rohit Ghai
  • Dimitry Y. Sorokin
Publication date 2018
Description
Dataset 6. Sheet 1 shows the MAGs positive for the marker gene acsB (K14138) encoding an acetyl-CoA synthase (ACS). The basis for Fig. 6, namely presence and absence of key genes involved in the Wood-Ljungdahly pathway, acetogenesis, methanogenesis, glycolysis and pyruvate to CO2 conversion is shown for each MAG. Sheet 2 shows the MAGs positive for the marker gene cdhC (K00193) encoding for the beta subunit of an acetyl-CoA decarboxylase synthase complex. While acsB and cdhC correspond roughly to the Bacterial-type and Archaeal-type (methanogens) enzymes with the same function, we found few discrepancies between marker gene and genome phylogeny within the Methanomassiliicoccaceae and Chloroflexi. (XLSX 52 kb)
Publisher Figshare
Organisations
  • Faculty of Science (FNWI) - Institute for Biodiversity and Ecosystem Dynamics (IBED)
Document type Dataset
Related publication A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
DOI https://doi.org/10.6084/m9.figshare.7109339.v1
Other links https://springernature.figshare.com/articles/Additional_file_9_of_A_metagenomics_roadmap_to_the_uncultured_genome_diversity_in_hypersaline_soda_lake_sediments/7109339/1
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