Lukatsky, D. B., Mulder, B. M., & Frenkel, D. (2006). Designing ordered DNA-linked nanoparticle assemblies. Journal of Physics-Condensed Matter, 18(18), S567-S580. https://doi.org/10.1088/0953-8984/18/18/S05
Allen, R. J., Frenkel, D., & ten Wolde, P. R. (2006). Forward flux sampling-type schemes for simulating rare events: Efficiency analysis. Journal of Chemical Physics, 124(19), 194111/1-194111/17.
Pool, R., & Bolhuis, P. G. (2006). Prediction of an Autocatalytic Replication Mechanism for Micelle Formation. Physical Review Letters, 97(1), 018302/1-018302/4.
Coluzza, I., van der Vies, S. M., & Frenkel, D. (2006). Translocation boost protein-folding efficiency of double-barreled chaperonins. Biophysical Journal, 90(10), 3375-3381. https://doi.org/10.1529/biophysj.105.074898
Juraszek, J., & Bolhuis, P. G. (2006). Sampling the multiple folding mechanisms of Trp-cage in explicit solvent. Proceedings of the National Academy of Sciences of the United States of America, 103(43), 15859-15864. https://doi.org/10.1073/pnas.0606692103
VandeVondele, J., Lynden-Bell, R., Meijer, E. J., & Sprik, M. (2006). Density Functional Theory Study of Tetrathiafulvalene and Thianthrene in Acetonitrile: Structure, Dynamics, and Redox Properties. The journal of Physical Chemistry. B, 110(8), 3614-3623. https://doi.org/10.1021/jp054841+
Koopman, E. A., & Lowe, C. P. (2006). Advantages of a Lowe-Andersen thermostat in molecular dynamics simulations. Journal of Chemical Physics, 124(20), 204103.
Bolhuis, P. G. (2006). Sampling Kinetic Protein Folding Pathways using All-Atom Models. In M. Ferrario, G. Ciccotti, & K. Binder (Eds.), Computer Simulation in Condensed Mater: from Materials to Chemical Biology. Vol. 1 (pp. 393-433). (Lecture Notes in Physics; No. 703). Springer-Verlag.
Smoluch, M. M., Baggerman, J., Zhang, H., Maas, H. P. A., De Cola, L., & Brouwer, A. M. (2006). Photoisomerization of Disperse Red 1 studied with transient absorption spectroscopy and quantum chemical calculations. The Journal of Physical Chemistry. A, 110(43), 11926-11937. https://doi.org/10.1021/jp054982b