Berkenbos, A. (2008). The dynamics of polymers by novel mesoscopic methods. [Thesis, fully internal, Universiteit van Amsterdam].

Juraszek, J. (2008). Proteins in action : simulations of conformational changes in small proteins. [Thesis, fully internal, Universiteit van Amsterdam].

Bozorgui, B. (2008). Computational methods to study strongly-binding polymer-colloid systems. [Thesis, externally prepared, Universiteit van Amsterdam].

Fomin, Y. D., Gribova, N. V., Ryzhov, V. N., Stishov, S. M., & Frenkel, D. (2008). Quasibinary amorphous phase in a three-dimensional system of particles with repulsive-shoulder interactions. Journal of Chemical Physics, 129(6), 064512. https://doi.org/10.1063/1.2965880

Liu, B. (2008). Molecular simulation studies of adsorption and diffusion : phenomena of gases in porous materials. [Thesis, fully internal, Universiteit van Amsterdam].

de Meyer, F. J. M., Venturoli, M., & Smit, B. (2008). Molecular simulations of lipid-mediated protein-protein interactions. Biophysical Journal, 95(4), 1851-1865. https://doi.org/10.1529/biophysj.107.124164

Huisman, B. A. H. (2008). Dynamical and structural self-organization : a study of friction, liquid-crystal nucleus growth, and supramolecular polymers through simple models. [Thesis, fully internal, Universiteit van Amsterdam].

Jukes, R. T. F. (2008). Photochromic Systems for Energy Transfer Switching. [Thesis, fully internal, Universiteit van Amsterdam].

van Meel, J. A., Arnold, A., Frenkel, D., Portegies Zwart, S. F., & Belleman, R. G. (2008). Harvesting graphics power for MD simulations. Molecular Simulation, 34(3), 259-266. https://doi.org/10.1080/08927020701744295

Poelwijk, F. J. (2008). Fitness landscapes of gene regulation in variable environments. [Thesis, externally prepared, Universiteit van Amsterdam].